Oral Presentation The 44th Lorne Conference on Protein Structure and Function 2019

The β2-clamp as a novel antimicrobial target (#7)

Amy E McGrath 1 , Alexander P Martyn 1 , Slobodan Jergic 1 , Andrew Robinson 1 , Graham Maw 2 , Andrew McElroy 2 , Michael J Kelso 1 , Aaron J Oakley 1 , Nicholas E Dixon 1
  1. Molecular Horizons and School of Chemistry and Molecular Bioscience, University of Wollongong and The Illawarra Health and Medical Research Institute, Wollongong, NSW, Australia
  2. EligoChem Ltd, Sandwich, Kent, United Kingdom

Bacterial DNA replication requires an orchestration of protein-protein and protein-DNA interactions to faithfully replicate DNA prior to cell division. One protein essential to this process, the β2-clamp, interacts with several proteins via a conserved binding site and mechanism. We have been probing this binding site as a target for novel antibiotics across Gram-negative bacteria. Six classes of novel compounds selected via a DNA-encoded chemical screening program were found to target the E. coli β2-clamp. We have characterised the interaction to the protein-binding pocket of the β2-clamp using X-ray crystallography and biophysical assays. The compounds, as first-generation hits, have affinities ranging from mid μM to mid nM against various Gram-negative β2clamps, inhibit in vitro DNA replication at low μM concentrations and showed promising antimicrobial activity. These inhibitors were ineffective against the human homologue, PCNA, and some were non-toxic to human cells. We are currently investigating the mechanism of action of these inhibitors using single-molecule in vivo imaging techniques. These are promising inhibitors of the β2-clamp and provide excellent scaffolds for optimization into antimicrobial compounds.